HL_23WI_093

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

23WI|1|a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_093 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2148

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

23WI|1|a|G|1089
23WI|1|a|U|1090
23WI|1|a|U|1091
23WI|1|a|A|1092
23WI|1|a|A|1093
23WI|1|a|G|1094
23WI|1|a|U|1095
23WI|1|a|C|1096

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain g

Small ribosomal subunit protein uS7

Chain u

Small ribosomal subunit protein bS21