HL_28LN_005

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

28LN|1|A2|U|294

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_005 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.4141

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

28LN|1|A2|G|288
28LN|1|A2|G|289
28LN|1|A2|U|290
28LN|1|A2|G|291
28LN|1|A2|A|292
28LN|1|A2|C|293
28LN|1|A2|U|294
28LN|1|A2|C|295

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AG

40S ribosomal protein S6

Chain AL

Small ribosomal subunit protein uS17