HL_28LN_006

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

28LN|1|A2|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_006 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.2582

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52776.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

3

Unit IDs

28LN|1|A2|C|322
28LN|1|A2|C|323
28LN|1|A2|C|324
28LN|1|A2|C|325
28LN|1|A2|C|326
28LN|1|A2|G|327
28LN|1|A2|U|328
28LN|1|A2|G|329

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain BW

60S ribosomal protein L24