HL_28LN_037

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_037 not in the Motif Atlas

Homologous match to HL_3ZGZ_003

Geometric discrepancy: 0.1887

The information below is about HL_3ZGZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

28LN|1|B2|G|53
28LN|1|B2|5MU|54
28LN|1|B2|PSU|55
28LN|1|B2|C|56
28LN|1|B2|G|57
28LN|1|B2|1MA|58
28LN|1|B2|U|59
28LN|1|B2|C|60
28LN|1|B2|C|61

Current chains

Chain B2

tRNA-Met-CAT

Nearby chains

Chain BJ

60S ribosomal protein L11

Chain Bo

Large ribosomal subunit protein eL42