HL_28LN_049

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

28LN|1|B5|U|1178, 28LN|1|B5|C|1179, 28LN|1|B5|C|1181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_049 not in the Motif Atlas

Homologous match to HL_8GLP_014

Geometric discrepancy: 0.2993

The information below is about HL_8GLP_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

28LN|1|B5|G|1177
28LN|1|B5|U|1178
28LN|1|B5|C|1179
28LN|1|B5|C|1180
28LN|1|B5|C|1181
28LN|1|B5|C|1182

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

60S ribosomal protein L5

Chain BI

60S ribosomal protein L10