HL_28LN_054

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_054 not in the Motif Atlas

Homologous match to HL_8GLP_020

Geometric discrepancy: 0.3512

The information below is about HL_8GLP_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20751.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

28LN|1|B5|C|1435
28LN|1|B5|C|1436
28LN|1|B5|U|1437
28LN|1|B5|C|1438
28LN|1|B5|U|1439
28LN|1|B5|C|1440
28LN|1|B5|C|1441
28LN|1|B5|A|1442
28LN|1|B5|G|1443
28LN|1|B5|U|1444
28LN|1|B5|C|1445
28LN|1|B5|C|1446
28LN|1|B5|G|1447

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Large ribosomal subunit protein uL30

Chain BQ

60S ribosomal protein L18

Chain Bb

Large ribosomal subunit protein eL29