HL_28LN_057
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 28LN|1|B5|U|1595, 28LN|1|B5|A|1599, 28LN|1|B5|A|1600
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_057 not in the Motif Atlas
- Homologous match to HL_9AXU_018
- Geometric discrepancy: 0.0755
- The information below is about HL_9AXU_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.4
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 13
Unit IDs
28LN|1|B5|A|1592
28LN|1|B5|C|1593
28LN|1|B5|G|1594
28LN|1|B5|U|1595
28LN|1|B5|G|1596
28LN|1|B5|C|1597
28LN|1|B5|A|1598
28LN|1|B5|A|1599
28LN|1|B5|A|1600
28LN|1|B5|U|1601
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain BB
- Large ribosomal subunit protein uL3
- Chain BP
- 60S ribosomal protein L17
- Chain Bj
- Large ribosomal subunit protein eL37
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