HL_28LN_058

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

28LN|1|B5|A|1629, 28LN|1|B5|G|1632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_058 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0543

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

28LN|1|B5|G|1626
28LN|1|B5|C|1627
28LN|1|B5|G|1628
28LN|1|B5|A|1629
28LN|1|B5|A|1630
28LN|1|B5|A|1631
28LN|1|B5|G|1632
28LN|1|B5|A|1633
28LN|1|B5|C|1634

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

60S ribosomal protein L15

Chain Bj

Large ribosomal subunit protein eL37