HL_28LN_091

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

28LN|1|B5|G|4194

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_091 not in the Motif Atlas

Homologous match to HL_9PN5_052

Geometric discrepancy: 0.1567

The information below is about HL_9PN5_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

28LN|1|B5|C|4192
28LN|1|B5|U|4193
28LN|1|B5|G|4194
28LN|1|B5|OMG|4195
28LN|1|B5|G|4196
28LN|1|B5|G|4197
28LN|1|B5|C|4198
28LN|1|B5|G|4199
28LN|1|B5|G|4200

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B2

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

Large ribosomal subunit protein eL29