HL_28LN_097
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 28LN|1|B5|U|4353
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_097 not in the Motif Atlas
- Homologous match to HL_8GLP_065
- Geometric discrepancy: 0.2762
- The information below is about HL_8GLP_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
28LN|1|B5|U|4351
28LN|1|B5|PSU|4352
28LN|1|B5|U|4353
28LN|1|B5|G|4354
28LN|1|B5|G|4355
28LN|1|B5|G|4356
28LN|1|B5|U|4357
28LN|1|B5|U|4358
28LN|1|B5|U|4359
28LN|1|B5|PSU|4360
28LN|1|B5|A|4361
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L13
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- Large ribosomal subunit protein eL42
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