HL_28LN_100

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

28LN|1|B5|U|4500

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_100 not in the Motif Atlas

Homologous match to HL_8GLP_068

Geometric discrepancy: 0.5725

The information below is about HL_8GLP_068

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

28LN|1|B5|U|4496
28LN|1|B5|OMU|4497
28LN|1|B5|OMG|4498
28LN|1|B5|PSU|4499
28LN|1|B5|U|4500
28LN|1|B5|C|4501
28LN|1|B5|A|4502

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3