HL_28LN_104

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

28LN|1|B5|G|4693, 28LN|1|B5|C|4697

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_104 not in the Motif Atlas

Homologous match to HL_9PN5_065

Geometric discrepancy: 0.4286

The information below is about HL_9PN5_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

28LN|1|B5|C|4687
28LN|1|B5|PSU|4688
28LN|1|B5|G|4689
28LN|1|B5|A|4690
28LN|1|B5|A|4691
28LN|1|B5|C|4692
28LN|1|B5|G|4693
28LN|1|B5|C|4694
28LN|1|B5|C|4695
28LN|1|B5|U|4696
28LN|1|B5|C|4697
28LN|1|B5|U|4698
28LN|1|B5|A|4699
28LN|1|B5|A|4700
28LN|1|B5|G|4701

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin-60S ribosomal protein L40