HL_28ZV_009

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

28ZV|1|S2|C|324, 28ZV|1|S2|C|325, 28ZV|1|S2|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZV_009 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.253

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.5

Basepair signature

cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

28ZV|1|S2|C|322
28ZV|1|S2|C|323
28ZV|1|S2|C|324
28ZV|1|S2|C|325
28ZV|1|S2|C|326
28ZV|1|S2|G|327
28ZV|1|S2|U|328
28ZV|1|S2|G|329

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6