HL_28ZX_008

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

28ZX|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZX_008 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2489

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

28ZX|1|S2|G|288
28ZX|1|S2|G|289
28ZX|1|S2|U|290
28ZX|1|S2|G|291
28ZX|1|S2|A|292
28ZX|1|S2|C|293
28ZX|1|S2|U|294
28ZX|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SL

Small ribosomal subunit protein uS17