HL_28ZX_018
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UG(PSU)UCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 28ZX|1|S2|G|821
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28ZX_018 not in the Motif Atlas
- Homologous match to HL_9PN5_092
- Geometric discrepancy: 0.0938
- The information below is about HL_9PN5_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
28ZX|1|S2|U|820
28ZX|1|S2|G|821
28ZX|1|S2|PSU|822
28ZX|1|S2|U|823
28ZX|1|S2|C|824
28ZX|1|S2|A|825
28ZX|1|S2|A|826
28ZX|1|S2|A|827
28ZX|1|S2|G|828
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: