HL_28ZX_028

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

28ZX|1|S2|U|1300, 28ZX|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|G|1294
28ZX|1|S2|A|1295
28ZX|1|S2|U|1296
28ZX|1|S2|U|1297
28ZX|1|S2|G|1298
28ZX|1|S2|A|1299
28ZX|1|S2|U|1300
28ZX|1|S2|A|1301
28ZX|1|S2|G|1302
28ZX|1|S2|C|1303
28ZX|1|S2|U|1304
28ZX|1|S2|C|1305

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin