HL_28ZY_023

3D structure

PDB id

28ZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

28ZY|1|S2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZY|1|S2|G|1054
28ZY|1|S2|A|1055
28ZY|1|S2|PSU|1056
28ZY|1|S2|C|1057
28ZY|1|S2|A|1058
28ZY|1|S2|G|1059
28ZY|1|S2|A|1060
28ZY|1|S2|U|1061
28ZY|1|S2|A|1062
28ZY|1|S2|C|1063
28ZY|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain B

mRNA

Chain D

Eukaryotic translation initiation factor 2 subunit 1

Chain G

Transfer RNA; tRNA

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26