HL_2AAR_013

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

2AAR|1|0|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.2182

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2AAR|1|0|G|423
2AAR|1|0|G|424
2AAR|1|0|A|425
2AAR|1|0|C|426
2AAR|1|0|C|427
2AAR|1|0|A|428
2AAR|1|0|C|429
2AAR|1|0|C|430

Current chains

Chain 0

23S ribosomal RNA

Nearby chains