HL_2AAR_028

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2AAR|1|0|A|1081, 2AAR|1|0|G|1082, 2AAR|1|0|C|1083

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.5108

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

2AAR|1|0|C|1075
2AAR|1|0|U|1076
2AAR|1|0|U|1077
2AAR|1|0|A|1078
2AAR|1|0|G|1079
2AAR|1|0|A|1080
2AAR|1|0|A|1081
2AAR|1|0|G|1082
2AAR|1|0|C|1083
2AAR|1|0|A|1084
2AAR|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains