HL_2AAR_052

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

2AAR|1|0|A|2247, 2AAR|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_052 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2413

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2AAR|1|0|C|2243
2AAR|1|0|C|2244
2AAR|1|0|A|2245
2AAR|1|0|A|2246
2AAR|1|0|A|2247
2AAR|1|0|A|2248
2AAR|1|0|U|2249
2AAR|1|0|G|2250
2AAR|1|0|U|2251
2AAR|1|0|A|2252
2AAR|1|0|A|2253
2AAR|1|0|C|2254
2AAR|1|0|G|2255

Current chains

Chain 0

23S ribosomal RNA

Nearby chains