HL_2AAR_054

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_054 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1435

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

2AAR|1|0|C|2303
2AAR|1|0|G|2304
2AAR|1|0|C|2305
2AAR|1|0|A|2306
2AAR|1|0|A|2307
2AAR|1|0|A|2308
2AAR|1|0|G|2309
2AAR|1|0|G|2310

Current chains

Chain 0

23S ribosomal RNA

Nearby chains