HL_2AAR_060

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_060 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1605

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

2AAR|1|0|C|2530
2AAR|1|0|U|2531
2AAR|1|0|G|2532
2AAR|1|0|U|2533
2AAR|1|0|U|2534
2AAR|1|0|C|2535
2AAR|1|0|G|2536

Current chains

Chain 0

23S ribosomal RNA

Nearby chains