HL_2AAR_064

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2AAR|1|0|A|2730, 2AAR|1|0|G|2731, 2AAR|1|0|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2AAR_064 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.3499

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|C|2725
2AAR|1|0|U|2726
2AAR|1|0|G|2727
2AAR|1|0|A|2728
2AAR|1|0|A|2729
2AAR|1|0|A|2730
2AAR|1|0|G|2731
2AAR|1|0|C|2732
2AAR|1|0|A|2733
2AAR|1|0|U|2734
2AAR|1|0|C|2735
2AAR|1|0|U|2736
2AAR|1|0|A|2737
2AAR|1|0|A|2738
2AAR|1|0|G|2739

Current chains

Chain 0

23S ribosomal RNA

Nearby chains