HL_2CSX_004
3D structure
- PDB id
- 2CSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCUGGUCAG
- Length
- 11 nucleotides
- Bulged bases
- 2CSX|1|D|C|16, 2CSX|1|D|U|17, 2CSX|1|D|G|19, 2CSX|1|D|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2CSX_004 not in the Motif Atlas
- Geometric match to HL_2CSX_001
- Geometric discrepancy: 0.1182
- The information below is about HL_2CSX_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_49941.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
2CSX|1|D|C|13
2CSX|1|D|A|14
2CSX|1|D|G|15
2CSX|1|D|C|16
2CSX|1|D|U|17
2CSX|1|D|G|18
2CSX|1|D|G|19
2CSX|1|D|U|20
2CSX|1|D|C|21
2CSX|1|D|A|21|||A
2CSX|1|D|G|22
Current chains
- Chain D
- RNA (75-MER)
Nearby chains
- Chain B
- Methionyl-tRNA synthetase
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