HL_2CSX_004

3D structure

PDB id

2CSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAGCUGGUCAG

Length

11 nucleotides

Bulged bases

2CSX|1|D|C|16, 2CSX|1|D|U|17, 2CSX|1|D|G|19, 2CSX|1|D|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2CSX_004 not in the Motif Atlas

Geometric match to HL_2CSX_001

Geometric discrepancy: 0.1182

The information below is about HL_2CSX_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_49941.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2CSX|1|D|C|13
2CSX|1|D|A|14
2CSX|1|D|G|15
2CSX|1|D|C|16
2CSX|1|D|U|17
2CSX|1|D|G|18
2CSX|1|D|G|19
2CSX|1|D|U|20
2CSX|1|D|C|21
2CSX|1|D|A|21|||A
2CSX|1|D|G|22

Current chains

Chain D

RNA (75-MER)

Nearby chains

Chain B

Methionyl-tRNA synthetase