2CSX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2CSX_001 | 1/C/13:22 | tRNA D-loop HL_49941.1 | ||
| HL_2CSX_002 | 1/C/31:39 | No text annotation HL_87553.1 | ||
| HL_2CSX_003 | 1/C/53:61 | T-loop with 2 stacked bulged bases HL_28252.8 | ||
| HL_2CSX_004 | 1/D/13:22 | tRNA D-loop | geometric HL_2CSX_001 HL_49941.1 | |
| HL_2CSX_007 | 1/D/31:39 | No text annotation | geometric HL_2CSX_002 HL_87553.1 | |
| HL_2CSX_006 | 1/D/53:61 | T-loop with 2 stacked bulged bases | geometric HL_2CSX_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2CSX_005 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2CSX_001 | Isolated cWH basepair | ||
| IL_2CSX_002 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_2CSX_001 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | tRNA junction J4_36296.3 | ||
| J4_2CSX_002 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | No text annotation |
Problematic loops
No problematic loops
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