2CSX | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_2CSX_001	1/C/13:22	tRNA D-loop HL_49941.1
HL_2CSX_002	1/C/31:39	No text annotation HL_87553.1
HL_2CSX_003	1/C/53:61	T-loop with 2 stacked bulged bases HL_28252.8
HL_2CSX_004	1/D/13:22	tRNA D-loop	geometric HL_2CSX_001 HL_49941.1
HL_2CSX_007	1/D/31:39	No text annotation	geometric HL_2CSX_002 HL_87553.1
HL_2CSX_006	1/D/53:61	T-loop with 2 stacked bulged bases	geometric HL_2CSX_003 HL_28252.8

#	loop id	Problem	Sequence
	HL_2CSX_005	Deprecated	No text annotation

#	loop id	Problem	Sequence
	IL_2CSX_001	complementary	Isolated cWH basepair
	IL_2CSX_002	complementary	Isolated cWH basepair

3D	Loop id	Location	Annotation; motif group	Mapped info
	J4_2CSX_001	1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66	tRNA junction J4_36296.3
	J4_2CSX_002	1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66	No text annotation

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Coloring options: Nucleotide numbers

2CSX Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops