HL_2DER_004

3D structure

PDB id

2DER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAGGCCCAG

Length

11 nucleotides

Bulged bases (A, C, G, U)

16A, 17G, 18G, 19C, 20C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66421.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

7

Unit IDs

2DER|1|D|U|13
2DER|1|D|A|14
2DER|1|D|G|15
2DER|1|D|A|16
2DER|1|D|G|17
2DER|1|D|G|18
2DER|1|D|C|19
2DER|1|D|C|20
2DER|1|D|C|20|||A
2DER|1|D|A|21
2DER|1|D|G|22

Current chains

Chain D

tRNA

Nearby chains

Chain B

tRNA-specific 2-thiouridylase mnmA