HL_2FMT_001

3D structure

PDB id

2FMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

2FMT|1|C|G|18, 2FMT|1|C|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2FMT_001 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1725

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

2FMT|1|C|C|13
2FMT|1|C|A|14
2FMT|1|C|G|15
2FMT|1|C|C|16
2FMT|1|C|C|17
2FMT|1|C|U|17|||A
2FMT|1|C|G|18
2FMT|1|C|G|19
2FMT|1|C|H2U|20
2FMT|1|C|A|21
2FMT|1|C|G|22

Current chains

Chain C

FORMYL-METHIONYL-TRNAFMET2

Nearby chains

Chain A

METHIONYL-TRNA FMET FORMYLTRANSFERASE