HL_2HHH_006

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

2HHH|1|A|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2HHH_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0879

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2HHH|1|A|G|255
2HHH|1|A|G|256
2HHH|1|A|U|257
2HHH|1|A|A|258
2HHH|1|A|A|259
2HHH|1|A|U|260
2HHH|1|A|G|261
2HHH|1|A|G|262
2HHH|1|A|C|263

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20