HL_2J28_009

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

2J28|1|B|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_009 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1121

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

2J28|1|B|G|194
2J28|1|B|A|195
2J28|1|B|A|196
2J28|1|B|A|197
2J28|1|B|C|198
2J28|1|B|A|199
2J28|1|B|U|200
2J28|1|B|C|201

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Z

50S RIBOSOMAL PROTEIN L31