HL_2J28_018

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

2J28|1|B|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_018 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.17

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2J28|1|B|C|487
2J28|1|B|G|488
2J28|1|B|G|489
2J28|1|B|C|490
2J28|1|B|G|491
2J28|1|B|A|492
2J28|1|B|G|493

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 7

SIGNAL SEQUENCE

Chain 9

SIGNAL RECOGNITION PARTICLE 54

Chain S

50S RIBOSOMAL PROTEIN L22