HL_2J28_030

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_030 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2056

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|978
2J28|1|B|A|979
2J28|1|B|A|980
2J28|1|B|A|981
2J28|1|B|C|982
2J28|1|B|A|983
2J28|1|B|A|984
2J28|1|B|C|985

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain Y

50S RIBOSOMAL PROTEIN L30