HL_2J28_031

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2J28|1|B|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.0936

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2J28|1|B|C|1064
2J28|1|B|U|1065
2J28|1|B|U|1066
2J28|1|B|A|1067
2J28|1|B|G|1068
2J28|1|B|A|1069
2J28|1|B|A|1070
2J28|1|B|G|1071
2J28|1|B|C|1072
2J28|1|B|A|1073
2J28|1|B|G|1074

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11