HL_2J28_033

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

2J28|1|B|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_033 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.3843

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

2J28|1|B|C|1172
2J28|1|B|U|1173
2J28|1|B|U|1174
2J28|1|B|A|1175
2J28|1|B|U|1176
2J28|1|B|G|1177

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains