HL_2J28_051

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

2J28|1|B|A|1913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3268

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2J28|1|B|G|1910
2J28|1|B|U|1911
2J28|1|B|A|1912
2J28|1|B|A|1913
2J28|1|B|C|1914
2J28|1|B|U|1915
2J28|1|B|A|1916
2J28|1|B|U|1917
2J28|1|B|A|1918
2J28|1|B|A|1919
2J28|1|B|C|1920

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains