HL_2J28_053

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

2J28|1|B|A|2030, 2J28|1|B|A|2031, 2J28|1|B|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_053 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1176

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

2J28|1|B|G|2027
2J28|1|B|U|2028
2J28|1|B|G|2029
2J28|1|B|A|2030
2J28|1|B|A|2031
2J28|1|B|G|2032
2J28|1|B|A|2033
2J28|1|B|U|2034
2J28|1|B|G|2035
2J28|1|B|C|2036

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3