HL_2J28_054

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

2J28|1|B|C|2145, 2J28|1|B|C|2146, 2J28|1|B|A|2147, 2J28|1|B|G|2148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_054 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1607

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2J28|1|B|A|2142
2J28|1|B|C|2143
2J28|1|B|G|2144
2J28|1|B|C|2145
2J28|1|B|C|2146
2J28|1|B|A|2147
2J28|1|B|G|2148
2J28|1|B|U|2149

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains