HL_2J28_057

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

2J28|1|B|A|2268, 2J28|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1511

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

2J28|1|B|C|2264
2J28|1|B|U|2265
2J28|1|B|A|2266
2J28|1|B|A|2267
2J28|1|B|A|2268
2J28|1|B|G|2269
2J28|1|B|A|2270
2J28|1|B|G|2271
2J28|1|B|U|2272
2J28|1|B|A|2273
2J28|1|B|A|2274
2J28|1|B|C|2275
2J28|1|B|G|2276

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain W

50S RIBOSOMAL PROTEIN L27