HL_2J28_064

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

2J28|1|B|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_064 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1152

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

2J28|1|B|U|2528
2J28|1|B|G|2529
2J28|1|B|A|2530
2J28|1|B|A|2531
2J28|1|B|G|2532
2J28|1|B|U|2533
2J28|1|B|A|2534
2J28|1|B|G|2535

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6