HL_2J28_069

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2J28|1|B|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_069 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1183

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|C|2745
2J28|1|B|U|2746
2J28|1|B|G|2747
2J28|1|B|A|2748
2J28|1|B|A|2749
2J28|1|B|A|2750
2J28|1|B|G|2751
2J28|1|B|C|2752
2J28|1|B|A|2753
2J28|1|B|U|2754
2J28|1|B|C|2755
2J28|1|B|U|2756
2J28|1|B|A|2757
2J28|1|B|A|2758
2J28|1|B|G|2759

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6

Chain J

50S RIBOSOMAL PROTEIN L13