HL_2J28_070

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

2J28|1|B|U|2797, 2J28|1|B|A|2799

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_070 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2391

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2J28|1|B|U|2796
2J28|1|B|U|2797
2J28|1|B|U|2798
2J28|1|B|A|2799
2J28|1|B|A|2800

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains