HL_2JL5_006

3D structure

PDB id

2JL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

2JL5|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL5_006 not in the Motif Atlas

Geometric match to HL_4LFB_006

Geometric discrepancy: 0.1253

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2JL5|1|A|G|259
2JL5|1|A|G|260
2JL5|1|A|U|261
2JL5|1|A|A|262
2JL5|1|A|A|263
2JL5|1|A|U|264
2JL5|1|A|G|265
2JL5|1|A|G|266
2JL5|1|A|C|267

Current chains

Chain A

16S RRNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20