HL_2JL6_025

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

2JL6|1|A|A|781, 2JL6|1|A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_025 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.1246

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

2JL6|1|A|U|779
2JL6|1|A|G|780
2JL6|1|A|A|781
2JL6|1|A|A|782
2JL6|1|A|A|783
2JL6|1|A|A|784
2JL6|1|A|G|785

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L2