HL_2JL6_028

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

2JL6|1|A|U|958, 2JL6|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_028 not in the Motif Atlas

Geometric match to HL_7RQB_027

Geometric discrepancy: 0.0963

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

2JL6|1|A|C|955
2JL6|1|A|G|956
2JL6|1|A|A|957
2JL6|1|A|U|958
2JL6|1|A|A|959
2JL6|1|A|A|960
2JL6|1|A|C|961
2JL6|1|A|G|962

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S RIBOSOMAL PROTEIN L16