HL_2JL6_040

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

2JL6|1|A|C|1532, 2JL6|1|A|G|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_040 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3709

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

2JL6|1|A|G|1526
2JL6|1|A|G|1527
2JL6|1|A|A|1528
2JL6|1|A|A|1528|||A
2JL6|1|A|G|1529
2JL6|1|A|C|1530
2JL6|1|A|C|1531
2JL6|1|A|C|1532
2JL6|1|A|G|1533
2JL6|1|A|C|1543
2JL6|1|A|A|1544
2JL6|1|A|A|1545
2JL6|1|A|C|1546

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L17