HL_2JL6_047

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

2JL6|1|A|A|1780, 2JL6|1|A|C|1781, 2JL6|1|A|C|1782, 2JL6|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_047 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0757

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

2JL6|1|A|U|1777
2JL6|1|A|U|1778
2JL6|1|A|U|1779
2JL6|1|A|A|1780
2JL6|1|A|C|1781
2JL6|1|A|C|1782
2JL6|1|A|A|1783
2JL6|1|A|A|1784
2JL6|1|A|A|1785
2JL6|1|A|A|1786
2JL6|1|A|A|1787

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain D

50S RIBOSOMAL PROTEIN L2