HL_2JL6_052

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

2JL6|1|A|A|2030, 2JL6|1|A|A|2031, 2JL6|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_052 not in the Motif Atlas

Geometric match to HL_7RQB_050

Geometric discrepancy: 0.0861

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2JL6|1|A|G|2027
2JL6|1|A|U|2028
2JL6|1|A|G|2029
2JL6|1|A|A|2030
2JL6|1|A|A|2031
2JL6|1|A|G|2032
2JL6|1|A|A|2033
2JL6|1|A|U|2034
2JL6|1|A|G|2035
2JL6|1|A|C|2036

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 5

50S RIBOSOMAL PROTEIN L32

Chain E

50S RIBOSOMAL PROTEIN L3