HL_2JL6_059

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_059 not in the Motif Atlas

Geometric match to HL_7RQB_057

Geometric discrepancy: 0.1008

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

2JL6|1|A|C|2355
2JL6|1|A|C|2356
2JL6|1|A|U|2357
2JL6|1|A|G|2358
2JL6|1|A|C|2359
2JL6|1|A|A|2360
2JL6|1|A|A|2361
2JL6|1|A|G|2362

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L27

Chain 8

50S RIBOSOMAL PROTEIN L35

Chain P

50S RIBOSOMAL PROTEIN L15