HL_2JL8_054

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

2JL8|1|A|G|2206, 2JL8|1|A|G|2207, 2JL8|1|A|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL8_054 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.2037

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

2JL8|1|A|C|2205
2JL8|1|A|G|2206
2JL8|1|A|G|2207
2JL8|1|A|A|2208
2JL8|1|A|U|2218
2JL8|1|A|G|2219

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L28

Chain D

50S RIBOSOMAL PROTEIN L2