HL_2KRY_001

3D structure

PDB id

2KRY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCC(RSQ)AUACC

Length

9 nucleotides

Bulged bases

2KRY|1|A|U|10

QA status

Modified nucleotides: RSQ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KRY_001 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.3661

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

2KRY|1|A|G|5
2KRY|1|A|C|6
2KRY|1|A|C|7
2KRY|1|A|RSQ|8
2KRY|1|A|A|9
2KRY|1|A|U|10
2KRY|1|A|A|11
2KRY|1|A|C|12
2KRY|1|A|C|13

Current chains

Chain A

RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')

Nearby chains