HL_2KYE_001

3D structure

PDB id

2KYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the pseudouridine modified P6.1 hairpin of human telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(PSU)(PSU)GGGC

Length

7 nucleotides

Bulged bases

2KYE|1|A|G|8

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KYE_001 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3936

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2KYE|1|A|G|5
2KYE|1|A|PSU|6
2KYE|1|A|PSU|7
2KYE|1|A|G|8
2KYE|1|A|G|9
2KYE|1|A|G|10
2KYE|1|A|C|11

Current chains

Chain A

RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU)P*CP*(PSU)P*C)-3')

Nearby chains